The use of wind power energy storage system is an effective measure to stabilize fluctuations in wind power today, however, the energy storage system control strategy has a direct impact on the wind power system's technical and economic performance. Based on the complementary in function of super-capacitor and battery, its application in wind farms based DFIG and the topology control structures for wind farm with distributed rectifier and centralized inverter are adopted, fuzzy neural PID controller is designed, and fuzzy neural network algorithm is used to optimize PID control parameters for hybrid energy storage system on line. Based on MATLAB / SIMULINK platform, the control system simulation model is established and analyzed. Simulation results show that the hybrid energy storage system can improve the life of the energy storage device. According to the compensate power and the fluctuation range of the state of charge of the energy storage systems, as well as wind power fluctuations in the degree of smoothing, the effectiveness of the control system is verified.